BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026F12SP1|AL428595
(675 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1583 1178 0.0
>3x_Contig1583
Length = 12509
Score = 1178 bits (584), Expect = 0.0
Identities = 644/673 (95%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 3 catattggacacttccaatatcatcttgaattktacaggcagattttgcatggatcagaa 62
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 3229 catattggacacttccaatatcatcttgaattgtacaggcagattttacatggatcagaa 3170
Query: 63 accaaaccgtattcaaatgttcagagaatcttacgaacctggaaaaggttggatctttaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3169 accaaaccgtattcaaatgttcagagaatcttacgaacctggaaaaggttggatctttaa 3110
Query: 123 gggtaaagatgaagaatatcatttatcaaaagactggtttcaagacctttccaaaaatgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 gggtaaagatgaagaatatcatttatcaaaagactggtttcaagacctttccaaaaatgt 3050
Query: 183 aacagaatatgatcataacttactacaaacggtagcttgaatctgatagattcccattat 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3049 aacagaatatgatcataacttactacaaacgg-agcttgaatctgatagattcccattat 2991
Query: 243 atggwttkgatttgagtaaaccaactgtatgaaaccaatctgtttgctaaagggtggtaa 302
|||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2990 atggattggatttgagtaaaccaactga--gaaaccaatctgtttgctaaagggtggtaa 2933
Query: 303 agggggtctaggtaatatgcatttcttaaccagcttgatcagaaacccaagattttgtaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 agggggtctaggtaatatgcatttcttaaccagcttgatcagaaacccaagattttgtaa 2873
Query: 363 agagggtaggwgtggacttcwacaacattttwtgtttgawtttawaagtatttctgatct 422
|||||||||| ||||||||| |||||||||| ||||||| || | ||||||| |||||||
Sbjct: 2872 agagggtaggagtggacttcaacaacattttatgtttgaattgaaaagtattgctgatct 2813
Query: 423 gggacttgttggactaccaaatkccgggwaatctactattttmaaccatatttctaatgc 482
|||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||
Sbjct: 2812 gggacttgttggactaccaaatgccgggaaatctactattttaaaccagatttctaatgc 2753
Query: 483 twctcctataktatgccattkggaawtcactacgttacacccaacgattggaacaatctc 542
| |||||| | || |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 2752 tactcctagagtaggccattgggaattcactacgttacacccaacgattggaacaatctc 2693
Query: 543 acttgggattgacaaaccgaagttcacagttgcagatattccgggaattwttttagatgc 602
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 2692 acttgggattgacaaaccgaagttcacagttgcagatattccgggaattattaaagatgc 2633
Query: 603 ctctcaggacaagggaatkggtcttgaatttttaagacacattgaacgttccaaaggttg 662
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 ctctcaggacaagggaatgggtcttgaatttttaagacacattgaacgttccaaaggttg 2573
Query: 663 ggttttcgtgatc 675
|||||||||||||
Sbjct: 2572 ggttttcgtgatc 2560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4278
Number of Sequences: 1807
Number of extensions: 4278
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 675
length of database: 10,358,551
effective HSP length: 16
effective length of query: 659
effective length of database: 10,329,639
effective search space: 6807232101
effective search space used: 6807232101
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.4 bits)